species:   Clros
pid:       PID2216
parent:    cro-mir-36
paralog:   b
locus:     CADEHS020000106.2:298126-298214
matures:   ['UCAAACACAAUUAGCGGUC', 'CCGCUAAUUGUGUUUGAGA']
srr:       ERR5950791
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram CADEHS020000106.2:298126-298214

366 out of bounds
502 alignments
169 proper strand
161 stranded perfect matches

********************                                              ********************** 
UCAAACACAAUUAGCGGUCUAUACCCAACUUUUCCAAAAAUUUUCCAGAGUGGAAGGUUUGGGUAUAGACCGCUAAUUGUGUUUGAGAU
((((((((((((((((((((((((((((.(((((((..............))))))).))))))))))))))))))))))))))))...
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=66 c
---------------------------------------------------------------------CCGCUAAUUGUGUUUGAGA- l=19 a=1 c*
UCAAACACAAUUAGCGGUCU--------------------------------------------------------------------- l=20 a=76 ma
--------------------------------------------------------------------ACCGCUAAUUGUGUUUGAGA- l=20 a=0 ma*

---------------------------------------------------------------------CCGCUAAUUGUGUUUGAGA- l=19 a=1 (c*)
-------------------------------------------------------------------GACCGCUAAUUGUGUUUGAGAU l=22 a=1 
-------------------------------------------------------------------GACCGCUAAUUGUGUUUGAGAc l=22 a=1 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUGc--- l=21 a=1 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUGAG-- l=22 a=6 
-------------------------------------------------GUGGAAGGUUUGGGUAUAGACCGC---------------- l=24 a=2 
UCAAACACAAUUAGCGGU----------------------------------------------------------------------- l=18 a=2 
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=66 (c)
UCAAACACAAUUgGCGGUC---------------------------------------------------------------------- l=19 a=1 
UCAAACACAAUUAGCGGUCU--------------------------------------------------------------------- l=20 a=76 (ma)
UCAAACACAAUUAGCGGUCa--------------------------------------------------------------------- l=20 a=5 
UCAAACACAAUUAGCGGUCUA-------------------------------------------------------------------- l=21 a=6 
UCAAACACAAUUAGCGGUCUAU------------------------------------------------------------------- l=22 a=1 

mb-01111
ax-1011011
ku-01
ss-101110011110
fn-101
